TPDB

3D PDB MODEL

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TPDB ID TPDB16323

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

CPIISNMCEDHCRRKKMEGQCDLLDCVCS

FASTA

>TPDB16323|Antibacterial|length=29
CPIISNMCEDHCRRKKMEGQCDLLDCVCS

Formula C131H221N41O44S8

Absent Amino Acids AFTWY

Common Amino Acids C

Mass 3330.92

PI 5.41

Basic Residues 5

Acidic Residues 5

Hydrophobic Residues 7

Net Charge -1

Boman Index 10.44

Hydrophobicity -0.293

Aliphatic Index 63.79

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 375

Absorbance 280nm 11.26

Polar Residues 10

number

0

A

2

R

1

N

3

D

6

C

2

E

1

Q

1

G

1

H

2

I

2

L

2

K

2

M

0

F

1

P

2

S

0

T

0

W

0

Y

1

V

Amino Acid Distribution

A: 0 R: 2 N: 1 D: 3 C: 6 E: 2 Q: 1 G: 1 H: 1 I: 2 L: 2 K: 2 M: 2 F: 0 P: 1 S: 2 T: 0 W: 0 Y: 0 V: 1

Length

29

Formula

C131H221N41O44S8

Mass

3330.92

PI

5.41

Net Charge

-1

Boman Index

10.44

Hydrophobicity

-0.293

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.