Back to search

Peptide record

TPDB16322

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16322
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
HNFDGLDLDLEYPRK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C82H122N22O26
ACQIMSTWV
DL
1832.00
4.44
3
4
5
-2
3.08
-1.213
78.00
Mammalian: 3.5 hour Yeast: 10 min E.coli: >10 hour
1490
0.81
2
Residue Composition
number
0
A
1
R
1
N
3
D
0
C
1
E
0
Q
1
G
1
H
0
I
3
L
1
K
0
M
1
F
1
P
0
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 1 D: 3 C: 0 E: 1 Q: 0 G: 1 H: 1 I: 0 L: 3 K: 1 M: 0 F: 1 P: 1 S: 0 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
15 reviewed residue count
C82H122N22O26 sequence-only estimate (linear, free termini)
1832.00 sequence-only estimate (linear, free termini)
4.44 sequence-only estimate (linear, free termini)
-2 sequence-only estimate (linear, free termini)
3.08 sequence-only estimate (linear, free termini)
-1.213 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.