TPDB

3D PDB MODEL

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TPDB ID TPDB16316

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 63-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MKGLSLVLLVLLLMLAGGEGNDPETQYWTCGYRGLCRRFCYAQEYIVGHHGCPRRYRCCAMRS

FASTA

>TPDB16316|Antibacterial|length=63
MKGLSLVLLVLLLMLAGGEGNDPETQYWTCGYRGLCRRFCYAQEYIVGHHGCPRRYRCCAMRS

Formula C315H495N93O84S9

Absent Amino Acids

Common Amino Acids L

Mass 7217.51

PI 8.56

Basic Residues 10

Acidic Residues 4

Hydrophobic Residues 26

Net Charge +4

Boman Index 3.51

Hydrophobicity -0.046

Aliphatic Index 80.48

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 13325

Absorbance 280nm 184.62

Polar Residues 18

number

3

A

7

R

1

N

1

D

6

C

3

E

2

Q

8

G

2

H

1

I

9

L

1

K

3

M

1

F

2

P

2

S

2

T

1

W

5

Y

3

V

Amino Acid Distribution

A: 3 R: 7 N: 1 D: 1 C: 6 E: 3 Q: 2 G: 8 H: 2 I: 1 L: 9 K: 1 M: 3 F: 1 P: 2 S: 2 T: 2 W: 1 Y: 5 V: 3

Length

63

Formula

C315H495N93O84S9

Mass

7217.51

PI

8.56

Net Charge

+4

Boman Index

3.51

Hydrophobicity

-0.046

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.