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Peptide record

TPDB16313

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB16313
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LVPFIGRTLGGLLARFGK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C91H151N25O20
NDCEQHMSWY
GL
1915.36
12.41
3
0
9
+3
-0.12
0.806
130.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
0
0.00
1
Residue Composition
number
1
A
2
R
0
N
0
D
0
C
0
E
0
Q
4
G
0
H
1
I
4
L
1
K
0
M
2
F
1
P
0
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 2 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 4 H: 0 I: 1 L: 4 K: 1 M: 0 F: 2 P: 1 S: 0 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
18 reviewed residue count
C91H151N25O20 sequence-only estimate (linear, free termini)
1915.36 sequence-only estimate (linear, free termini)
12.41 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
-0.12 sequence-only estimate (linear, free termini)
0.806 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.