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Peptide record

TPDB16307

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB16307
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
FKLQQTSCRKRDWKKP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C91H149N29O23S1
ANEGHIMYV
K
2049.42
10.97
6
1
3
+5
4.14
-1.875
24.38
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
5500
2.68
5
Residue Composition
number
0
A
2
R
0
N
1
D
1
C
0
E
2
Q
0
G
0
H
0
I
1
L
4
K
0
M
1
F
1
P
1
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 2 N: 0 D: 1 C: 1 E: 0 Q: 2 G: 0 H: 0 I: 0 L: 1 K: 4 M: 0 F: 1 P: 1 S: 1 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
16 reviewed residue count
C91H149N29O23S1 sequence-only estimate (linear, free termini)
2049.42 sequence-only estimate (linear, free termini)
10.97 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
4.14 sequence-only estimate (linear, free termini)
-1.875 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.