Back to search

Peptide record

TPDB16296

Antibacterial standard
14 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16296
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 14-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
CAADIVGQCPAKLK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C60H105N17O18S2
RNEHMFSTWY
A
1416.72
8.29
2
1
6
+1
0.18
0.436
97.86
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
125
0.09
3
Residue Composition
number
3
A
0
R
0
N
1
D
2
C
0
E
1
Q
1
G
0
H
1
I
1
L
2
K
0
M
0
F
1
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 3 R: 0 N: 0 D: 1 C: 2 E: 0 Q: 1 G: 1 H: 0 I: 1 L: 1 K: 2 M: 0 F: 0 P: 1 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
14 reviewed residue count
C60H105N17O18S2 sequence-only estimate (linear, free termini)
1416.72 sequence-only estimate (linear, free termini)
8.29 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.18 sequence-only estimate (linear, free termini)
0.436 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.