Back to search

Peptide record

TPDB16272

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16272
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
AKWCFRVCYRGICYRRCR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C102H159N35O21S4
NDEQHLMPST
R
2339.85
10.10
6
0
7
+6
3.24
-0.389
43.33
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
8730
3.73
6
Residue Composition
number
1
A
5
R
0
N
0
D
4
C
0
E
0
Q
1
G
0
H
1
I
0
L
1
K
0
M
1
F
0
P
0
S
0
T
1
W
2
Y
1
V
Amino Acid Distribution
A: 1 R: 5 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 1 H: 0 I: 1 L: 0 K: 1 M: 0 F: 1 P: 0 S: 0 T: 0 W: 1 Y: 2 V: 1
Chemical Descriptors
18 reviewed residue count
C102H159N35O21S4 sequence-only estimate (linear, free termini)
2339.85 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
3.24 sequence-only estimate (linear, free termini)
-0.389 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.