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Peptide record

TPDB16266

Antibacterial standard
5 amino acids
Basic Information
3D PDB MODEL
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TPDB16266
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 5-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RAHWR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C32H48N14O6
NDCEQGILKMFPSTYV
R
724.82
12.40
3
0
2
+2
6.07
-2.260
20.00
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
5500
7.59
0
Residue Composition
number
1
A
2
R
0
N
0
D
0
C
0
E
0
Q
0
G
1
H
0
I
0
L
0
K
0
M
0
F
0
P
0
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 2 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 0 K: 0 M: 0 F: 0 P: 0 S: 0 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
5 reviewed residue count
C32H48N14O6 sequence-only estimate (linear, free termini)
724.82 sequence-only estimate (linear, free termini)
12.40 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
6.07 sequence-only estimate (linear, free termini)
-2.260 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.