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Peptide record

TPDB16250

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB16250
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GLFSKKGGKGGKSWIKG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C80H131N23O20
ARNDCEQHMPTYV
G
1735.06
11.12
5
0
4
+5
0.81
-0.782
45.88
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
5500
3.17
2
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
0
E
0
Q
6
G
0
H
1
I
1
L
5
K
0
M
1
F
0
P
2
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 6 H: 0 I: 1 L: 1 K: 5 M: 0 F: 1 P: 0 S: 2 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C80H131N23O20 sequence-only estimate (linear, free termini)
1735.06 sequence-only estimate (linear, free termini)
11.12 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
0.81 sequence-only estimate (linear, free termini)
-0.782 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.