TPDB

3D PDB MODEL

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TPDB ID TPDB16221

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 40-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

GASCDCHPFVGTYWFGISNCPSGHGYRKKCASFFGVCCVK

FASTA

>TPDB16221|Antibacterial|length=40
GASCDCHPFVGTYWFGISNCPSGHGYRKKCASFFGVCCVK

Formula C192H276N52O51S6

Absent Amino Acids EQLM

Common Amino Acids CG

Mass 4320.98

PI 8.31

Basic Residues 6

Acidic Residues 1

Hydrophobic Residues 13

Net Charge +3

Boman Index -1.16

Hydrophobicity 0.107

Aliphatic Index 36.50

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8855

Absorbance 280nm 204.93

Polar Residues 14

number

2

A

1

R

1

N

1

D

6

C

0

E

0

Q

6

G

2

H

1

I

0

L

3

K

0

M

4

F

2

P

4

S

1

T

1

W

2

Y

3

V

Amino Acid Distribution

A: 2 R: 1 N: 1 D: 1 C: 6 E: 0 Q: 0 G: 6 H: 2 I: 1 L: 0 K: 3 M: 0 F: 4 P: 2 S: 4 T: 1 W: 1 Y: 2 V: 3

Length

40

Formula

C192H276N52O51S6

Mass

4320.98

PI

8.31

Net Charge

+3

Boman Index

-1.16

Hydrophobicity

0.107

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.