TPDB

3D PDB MODEL

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TPDB ID TPDB16218

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

modified_plain

Has_Modification Yes

Description A 47-aa modified antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

IPYGGNGVHHGKAGDSXTVDTAIGNIGNNAASIIGGMISGWASGLAG

FASTA

>TPDB16218|Antibacterial|length=47
IPYGGNGVHHGKAGDSXTVDTAIGNIGNNAASIIGGMISGWASGLAG

Formula C186H292N56O62S1

Absent Amino Acids RCEQF

Common Amino Acids G

Mass 4336.76

PI 6.01

Basic Residues 3

Acidic Residues 2

Hydrophobic Residues 18

Net Charge -1

Boman Index 2.10

Hydrophobicity 0.157

Aliphatic Index 83.19

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 161.18

Polar Residues 11

number

6

A

0

R

4

N

2

D

0

C

0

E

0

Q

12

G

2

H

6

I

1

L

1

K

1

M

0

F

1

P

4

S

2

T

1

W

1

Y

2

V

Amino Acid Distribution

A: 6 R: 0 N: 4 D: 2 C: 0 E: 0 Q: 0 G: 12 H: 2 I: 6 L: 1 K: 1 M: 1 F: 0 P: 1 S: 4 T: 2 W: 1 Y: 1 V: 2

Length

47

Formula

C186H292N56O62S1

Mass

4336.76

PI

6.01

Net Charge

-1

Boman Index

2.10

Hydrophobicity

0.157

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.