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Peptide record

TPDB16213

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB16213
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KLLKKFSLLKPWA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C79H130N18O15
RNDCEQGHIMTYV
LK
1572.01
11.00
4
0
7
+4
-0.09
0.069
127.69
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
5500
3.50
1
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
4
L
4
K
0
M
1
F
1
P
1
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 4 K: 4 M: 0 F: 1 P: 1 S: 1 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
13 reviewed residue count
C79H130N18O15 sequence-only estimate (linear, free termini)
1572.01 sequence-only estimate (linear, free termini)
11.00 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
-0.09 sequence-only estimate (linear, free termini)
0.069 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.