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Peptide record

TPDB16212

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB16212
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
AVPLIYKRPGVYVTKRPKGK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C107H180N30O24
NDCEQHMFSW
K
2270.79
11.06
6
0
8
+6
1.46
-0.540
87.50
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
2980
1.31
3
Residue Composition
number
1
A
2
R
0
N
0
D
0
C
0
E
0
Q
2
G
0
H
1
I
1
L
4
K
0
M
0
F
3
P
0
S
1
T
0
W
2
Y
3
V
Amino Acid Distribution
A: 1 R: 2 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 1 K: 4 M: 0 F: 0 P: 3 S: 0 T: 1 W: 0 Y: 2 V: 3
Chemical Descriptors
20 reviewed residue count
C107H180N30O24 sequence-only estimate (linear, free termini)
2270.79 sequence-only estimate (linear, free termini)
11.06 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
1.46 sequence-only estimate (linear, free termini)
-0.540 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.