Back to search

Peptide record

TPDB16188

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16188
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
VYPFMWGGAYCFCDAENT
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C95H124N20O27S3
RQHILKS
ACGFY
2074.33
3.01
0
2
9
-2
0.13
0.178
27.22
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
8605
4.15
6
Residue Composition
number
2
A
0
R
1
N
1
D
2
C
1
E
0
Q
2
G
0
H
0
I
0
L
0
K
1
M
2
F
1
P
0
S
1
T
1
W
2
Y
1
V
Amino Acid Distribution
A: 2 R: 0 N: 1 D: 1 C: 2 E: 1 Q: 0 G: 2 H: 0 I: 0 L: 0 K: 0 M: 1 F: 2 P: 1 S: 0 T: 1 W: 1 Y: 2 V: 1
Chemical Descriptors
18 reviewed residue count
C95H124N20O27S3 sequence-only estimate (linear, free termini)
2074.33 sequence-only estimate (linear, free termini)
3.01 sequence-only estimate (linear, free termini)
-2 sequence-only estimate (linear, free termini)
0.13 sequence-only estimate (linear, free termini)
0.178 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.