TPDB

3D PDB MODEL

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TPDB ID TPDB16163

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MNRSPDKIIALIFLLISLLVLCLALWQIVF

FASTA

>TPDB16163|Antibacterial|length=30
MNRSPDKIIALIFLLISLLVLCLALWQIVF

Formula C167H275N37O37S2

Absent Amino Acids EGHTY

Common Amino Acids L

Mass 3457.37

PI 8.97

Basic Residues 2

Acidic Residues 1

Hydrophobic Residues 21

Net Charge +1

Boman Index -6.07

Hydrophobicity 1.730

Aliphatic Index 195.00

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 159.08

Polar Residues 5

number

2

A

1

R

1

N

1

D

1

C

0

E

1

Q

0

G

0

H

5

I

8

L

1

K

1

M

2

F

1

P

2

S

0

T

1

W

0

Y

2

V

Amino Acid Distribution

A: 2 R: 1 N: 1 D: 1 C: 1 E: 0 Q: 1 G: 0 H: 0 I: 5 L: 8 K: 1 M: 1 F: 2 P: 1 S: 2 T: 0 W: 1 Y: 0 V: 2

Length

30

Formula

C167H275N37O37S2

Mass

3457.37

PI

8.97

Net Charge

+1

Boman Index

-6.07

Hydrophobicity

1.730

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.