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Peptide record

TPDB16162

Antibacterial standard
11 amino acids
Basic Information
3D PDB MODEL
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TPDB16162
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 11-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RDKPQQWFWLM
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C73H103N19O16S1
ANCEGHISTYV
QW
1534.80
10.09
2
1
5
+1
2.31
-1.255
35.45
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
11000
7.17
2
Residue Composition
number
0
A
1
R
0
N
1
D
0
C
0
E
2
Q
0
G
0
H
0
I
1
L
1
K
1
M
1
F
1
P
0
S
0
T
2
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 1 C: 0 E: 0 Q: 2 G: 0 H: 0 I: 0 L: 1 K: 1 M: 1 F: 1 P: 1 S: 0 T: 0 W: 2 Y: 0 V: 0
Chemical Descriptors
11 reviewed residue count
C73H103N19O16S1 sequence-only estimate (linear, free termini)
1534.80 sequence-only estimate (linear, free termini)
10.09 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
2.31 sequence-only estimate (linear, free termini)
-1.255 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.