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Peptide record

TPDB16161

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16161
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
EAAAKKLFKKILKYL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H146N20O19
RNDCQGHMPSTWV
K
1764.23
10.47
5
1
9
+4
0.44
-0.013
124.00
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
1490
0.84
1
Residue Composition
number
3
A
0
R
0
N
0
D
0
C
1
E
0
Q
0
G
0
H
1
I
3
L
5
K
0
M
1
F
0
P
0
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 3 R: 0 N: 0 D: 0 C: 0 E: 1 Q: 0 G: 0 H: 0 I: 1 L: 3 K: 5 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
15 reviewed residue count
C86H146N20O19 sequence-only estimate (linear, free termini)
1764.23 sequence-only estimate (linear, free termini)
10.47 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
0.44 sequence-only estimate (linear, free termini)
-0.013 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.