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Peptide record

TPDB16155

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB16155
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
VFKTHHNAVSSYIKDVFRVI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C110H170N30O28
CEQGLMPW
V
2360.74
10.19
5
1
10
+2
1.32
0.195
102.00
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
1490
0.63
5
Residue Composition
number
1
A
1
R
1
N
1
D
0
C
0
E
0
Q
0
G
2
H
2
I
0
L
2
K
0
M
2
F
0
P
2
S
1
T
0
W
1
Y
4
V
Amino Acid Distribution
A: 1 R: 1 N: 1 D: 1 C: 0 E: 0 Q: 0 G: 0 H: 2 I: 2 L: 0 K: 2 M: 0 F: 2 P: 0 S: 2 T: 1 W: 0 Y: 1 V: 4
Chemical Descriptors
20 reviewed residue count
C110H170N30O28 sequence-only estimate (linear, free termini)
2360.74 sequence-only estimate (linear, free termini)
10.19 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.32 sequence-only estimate (linear, free termini)
0.195 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.