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Peptide record

TPDB16149

Antibacterial standard
11 amino acids
Basic Information
3D PDB MODEL
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TPDB16149
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 11-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KPAFLFKGYKP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C66H98N14O13
RNDCEQHIMSTWV
K
1295.59
10.46
3
0
5
+3
0.29
-0.491
44.55
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
1490
1.15
1
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
0
I
1
L
3
K
0
M
2
F
2
P
0
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 1 K: 3 M: 0 F: 2 P: 2 S: 0 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
11 reviewed residue count
C66H98N14O13 sequence-only estimate (linear, free termini)
1295.59 sequence-only estimate (linear, free termini)
10.46 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
0.29 sequence-only estimate (linear, free termini)
-0.491 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.