TPDB

3D PDB MODEL

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TPDB ID TPDB16141

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 34-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

AMWLDVLKKIGTVALHAGKAALGAVADTISQGEQ

FASTA

>TPDB16141|Antibacterial|length=34
AMWLDVLKKIGTVALHAGKAALGAVADTISQGEQ

Formula C154H256N42O46S1

Absent Amino Acids RNCFPY

Common Amino Acids A

Mass 3464.04

PI 7.77

Basic Residues 4

Acidic Residues 3

Hydrophobic Residues 18

Net Charge +0

Boman Index 4.10

Hydrophobicity 0.418

Aliphatic Index 115.00

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 158.77

Polar Residues 5

number

7

A

0

R

0

N

2

D

0

C

1

E

2

Q

4

G

1

H

2

I

4

L

3

K

1

M

0

F

0

P

1

S

2

T

1

W

0

Y

3

V

Amino Acid Distribution

A: 7 R: 0 N: 0 D: 2 C: 0 E: 1 Q: 2 G: 4 H: 1 I: 2 L: 4 K: 3 M: 1 F: 0 P: 0 S: 1 T: 2 W: 1 Y: 0 V: 3

Length

34

Formula

C154H256N42O46S1

Mass

3464.04

PI

7.77

Net Charge

+0

Boman Index

4.10

Hydrophobicity

0.418

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.