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Peptide record

TPDB16130

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16130
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RSAGWVIPIGTLVKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C76H129N21O18
NDCEQHMFY
GIKV
1624.99
11.64
3
0
7
+3
0.21
0.393
123.33
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
5500
3.38
2
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
0
E
0
Q
2
G
0
H
2
I
1
L
2
K
0
M
0
F
1
P
1
S
1
T
1
W
0
Y
2
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 2 L: 1 K: 2 M: 0 F: 0 P: 1 S: 1 T: 1 W: 1 Y: 0 V: 2
Chemical Descriptors
15 reviewed residue count
C76H129N21O18 sequence-only estimate (linear, free termini)
1624.99 sequence-only estimate (linear, free termini)
11.64 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
0.21 sequence-only estimate (linear, free termini)
0.393 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.