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Peptide record

TPDB16128

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB16128
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RFCWFRVCYRGICYRRCR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C108H163N37O21S4
ANDEQHLKMPST
R
2443.96
10.26
6
0
7
+6
3.69
-0.367
37.78
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
8730
3.57
6
Residue Composition
number
0
A
6
R
0
N
0
D
4
C
0
E
0
Q
1
G
0
H
1
I
0
L
0
K
0
M
2
F
0
P
0
S
0
T
1
W
2
Y
1
V
Amino Acid Distribution
A: 0 R: 6 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 1 H: 0 I: 1 L: 0 K: 0 M: 0 F: 2 P: 0 S: 0 T: 0 W: 1 Y: 2 V: 1
Chemical Descriptors
18 reviewed residue count
C108H163N37O21S4 sequence-only estimate (linear, free termini)
2443.96 sequence-only estimate (linear, free termini)
10.26 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
3.69 sequence-only estimate (linear, free termini)
-0.367 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.