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Peptide record

TPDB16120

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB16120
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LWGTRSGIQPEQH
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C66H101N21O20
ANDCKMFYV
QG
1508.66
7.85
2
1
3
+0
2.26
-1.131
60.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
5500
3.65
4
Residue Composition
number
0
A
1
R
0
N
0
D
0
C
1
E
2
Q
2
G
1
H
1
I
1
L
0
K
0
M
0
F
1
P
1
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 0 E: 1 Q: 2 G: 2 H: 1 I: 1 L: 1 K: 0 M: 0 F: 0 P: 1 S: 1 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
13 reviewed residue count
C66H101N21O20 sequence-only estimate (linear, free termini)
1508.66 sequence-only estimate (linear, free termini)
7.85 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
2.26 sequence-only estimate (linear, free termini)
-1.131 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.