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Peptide record

TPDB16118

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB16118
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RGGRLCYCRRFCVCVGR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C82H138N32O19S4
ANDEQHIKMPSTW
R
2004.44
9.95
5
0
5
+5
2.99
0.000
57.06
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1740
0.87
5
Residue Composition
number
0
A
5
R
0
N
0
D
4
C
0
E
0
Q
3
G
0
H
0
I
1
L
0
K
0
M
1
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 5 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 3 H: 0 I: 0 L: 1 K: 0 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
17 reviewed residue count
C82H138N32O19S4 sequence-only estimate (linear, free termini)
2004.44 sequence-only estimate (linear, free termini)
9.95 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
2.99 sequence-only estimate (linear, free termini)
0.000 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.