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Peptide record

TPDB16109

Antibacterial standard
14 amino acids
Basic Information
3D PDB MODEL
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TPDB16109
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 14-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
CAGLIKQTCTCYRK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C66H114N20O19S3
NDEHMFPSWV
C
1587.93
9.14
3
0
4
+3
1.46
-0.093
62.86
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
1615
1.02
7
Residue Composition
number
1
A
1
R
0
N
0
D
3
C
0
E
1
Q
1
G
0
H
1
I
1
L
2
K
0
M
0
F
0
P
0
S
2
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 3 E: 0 Q: 1 G: 1 H: 0 I: 1 L: 1 K: 2 M: 0 F: 0 P: 0 S: 0 T: 2 W: 0 Y: 1 V: 0
Chemical Descriptors
14 reviewed residue count
C66H114N20O19S3 sequence-only estimate (linear, free termini)
1587.93 sequence-only estimate (linear, free termini)
9.14 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.46 sequence-only estimate (linear, free termini)
-0.093 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.