Back to search

Peptide record

TPDB16081

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16081
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
YRYHLKFCKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C66H100N18O13S1
ANDEQGIMPSTWV
K
1385.69
10.23
5
0
4
+4
2.73
-1.290
39.00
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
2980
2.15
3
Residue Composition
number
0
A
1
R
0
N
0
D
1
C
0
E
0
Q
0
G
1
H
0
I
1
L
3
K
0
M
1
F
0
P
0
S
0
T
0
W
2
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 1 K: 3 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 2 V: 0
Chemical Descriptors
10 reviewed residue count
C66H100N18O13S1 sequence-only estimate (linear, free termini)
1385.69 sequence-only estimate (linear, free termini)
10.23 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
2.73 sequence-only estimate (linear, free termini)
-1.290 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.