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Peptide record

TPDB16067

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB16067
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
NKVKEWWKWLKSL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H129N21O18
ARDCQGHIMFPTY
K
1745.10
10.55
4
1
6
+3
1.40
-1.100
82.31
Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour
16500
9.46
2
Residue Composition
number
0
A
0
R
1
N
0
D
0
C
1
E
0
Q
0
G
0
H
0
I
2
L
4
K
0
M
0
F
0
P
1
S
0
T
3
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 1 D: 0 C: 0 E: 1 Q: 0 G: 0 H: 0 I: 0 L: 2 K: 4 M: 0 F: 0 P: 0 S: 1 T: 0 W: 3 Y: 0 V: 1
Chemical Descriptors
13 reviewed residue count
C86H129N21O18 sequence-only estimate (linear, free termini)
1745.10 sequence-only estimate (linear, free termini)
10.55 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.40 sequence-only estimate (linear, free termini)
-1.100 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.