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Peptide record

TPDB16062

Antibacterial standard
11 amino acids
Basic Information
3D PDB MODEL
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TPDB16062
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 11-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
IQRWWKVWLKV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C78H116N20O13
ANDCEGHMFPSTY
W
1541.91
11.64
3
0
7
+3
0.60
-0.164
123.64
Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour
16500
10.70
1
Residue Composition
number
0
A
1
R
0
N
0
D
0
C
0
E
1
Q
0
G
0
H
1
I
1
L
2
K
0
M
0
F
0
P
0
S
0
T
3
W
0
Y
2
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 1 L: 1 K: 2 M: 0 F: 0 P: 0 S: 0 T: 0 W: 3 Y: 0 V: 2
Chemical Descriptors
11 reviewed residue count
C78H116N20O13 sequence-only estimate (linear, free termini)
1541.91 sequence-only estimate (linear, free termini)
11.64 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
0.60 sequence-only estimate (linear, free termini)
-0.164 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.