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Peptide record

TPDB16056

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB16056
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
YKPVTNFSTYKPVTNF
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C91H132N20O25
ARDCEQGHILMW
T
1906.17
9.97
2
0
6
+2
1.36
-0.594
36.25
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
2980
1.56
8
Residue Composition
number
0
A
0
R
2
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
2
K
0
M
2
F
2
P
1
S
3
T
0
W
2
Y
2
V
Amino Acid Distribution
A: 0 R: 0 N: 2 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 2 M: 0 F: 2 P: 2 S: 1 T: 3 W: 0 Y: 2 V: 2
Chemical Descriptors
16 reviewed residue count
C91H132N20O25 sequence-only estimate (linear, free termini)
1906.17 sequence-only estimate (linear, free termini)
9.97 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.36 sequence-only estimate (linear, free termini)
-0.594 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.