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Peptide record

TPDB16055

Antibacterial standard
7 amino acids
Basic Information
3D PDB MODEL
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TPDB16055
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 7-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
YKPVTNF
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C42H61N9O11
ARDCEQGHILMSW
NKFPTYV
868.00
9.74
1
0
3
+1
1.13
-0.571
41.43
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
1490
1.72
3
Residue Composition
number
0
A
0
R
1
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
1
K
0
M
1
F
1
P
0
S
1
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 1 M: 0 F: 1 P: 1 S: 0 T: 1 W: 0 Y: 1 V: 1
Chemical Descriptors
7 reviewed residue count
C42H61N9O11 sequence-only estimate (linear, free termini)
868.00 sequence-only estimate (linear, free termini)
9.74 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
1.13 sequence-only estimate (linear, free termini)
-0.571 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.