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Peptide record

TPDB16044

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB16044
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RRFRPKVTITIQ
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C68H119N23O16
ANDCEGHLMSWY
R
1514.84
12.71
4
0
4
+4
3.68
-0.658
89.17
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
0
0.00
3
Residue Composition
number
0
A
3
R
0
N
0
D
0
C
0
E
1
Q
0
G
0
H
2
I
0
L
1
K
0
M
1
F
1
P
0
S
2
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 2 L: 0 K: 1 M: 0 F: 1 P: 1 S: 0 T: 2 W: 0 Y: 0 V: 1
Chemical Descriptors
12 reviewed residue count
C68H119N23O16 sequence-only estimate (linear, free termini)
1514.84 sequence-only estimate (linear, free termini)
12.71 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
3.68 sequence-only estimate (linear, free termini)
-0.658 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.