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Peptide record

TPDB16042

Antibacterial standard
14 amino acids
Basic Information
3D PDB MODEL
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TPDB16042
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 14-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KIRRFRPKVTITIQ
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C80H142N26O18
ANDCEGHLMSWY
RI
1756.17
12.71
5
0
5
+5
3.20
-0.521
104.29
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
0
0.00
3
Residue Composition
number
0
A
3
R
0
N
0
D
0
C
0
E
1
Q
0
G
0
H
3
I
0
L
2
K
0
M
1
F
1
P
0
S
2
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 3 L: 0 K: 2 M: 0 F: 1 P: 1 S: 0 T: 2 W: 0 Y: 0 V: 1
Chemical Descriptors
14 reviewed residue count
C80H142N26O18 sequence-only estimate (linear, free termini)
1756.17 sequence-only estimate (linear, free termini)
12.71 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
3.20 sequence-only estimate (linear, free termini)
-0.521 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.