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Peptide record

TPDB16039

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB16039
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RFLRKIRRFRPKVTITIQ
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C107H186N36O22
ANDCEGHMSWY
R
2328.88
13.01
7
0
7
+7
3.71
-0.539
102.78
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
0
0.00
3
Residue Composition
number
0
A
5
R
0
N
0
D
0
C
0
E
1
Q
0
G
0
H
3
I
1
L
2
K
0
M
2
F
1
P
0
S
2
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 5 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 3 L: 1 K: 2 M: 0 F: 2 P: 1 S: 0 T: 2 W: 0 Y: 0 V: 1
Chemical Descriptors
18 reviewed residue count
C107H186N36O22 sequence-only estimate (linear, free termini)
2328.88 sequence-only estimate (linear, free termini)
13.01 sequence-only estimate (linear, free termini)
+7 sequence-only estimate (linear, free termini)
3.71 sequence-only estimate (linear, free termini)
-0.539 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.