TPDB

3D PDB MODEL

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TPDB ID TPDB16036

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

GLPVCGETCTLGTCFTQGCTCSWPICKRN

FASTA

>TPDB16036|Antibacterial|length=29
GLPVCGETCTLGTCFTQGCTCSWPICKRN

Formula C128H204N36O40S6

Absent Amino Acids ADHMY

Common Amino Acids C

Mass 3079.61

PI 7.63

Basic Residues 2

Acidic Residues 1

Hydrophobic Residues 6

Net Charge +1

Boman Index 0.81

Hydrophobicity 0.179

Aliphatic Index 50.34

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 190.77

Polar Residues 14

number

0

A

1

R

1

N

0

D

6

C

1

E

1

Q

4

G

0

H

1

I

2

L

1

K

0

M

1

F

2

P

1

S

5

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 0 R: 1 N: 1 D: 0 C: 6 E: 1 Q: 1 G: 4 H: 0 I: 1 L: 2 K: 1 M: 0 F: 1 P: 2 S: 1 T: 5 W: 1 Y: 0 V: 1

Length

29

Formula

C128H204N36O40S6

Mass

3079.61

PI

7.63

Net Charge

+1

Boman Index

0.81

Hydrophobicity

0.179

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.