Back to search

Peptide record

TPDB16033

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16033
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
DADVEPELYHWGKVWLPN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C102H142N24O29
RCQIMFST
DELPWV
2168.39
4.06
2
4
8
-3
1.26
-0.750
81.11
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
12490
5.76
2
Residue Composition
number
1
A
0
R
1
N
2
D
0
C
2
E
0
Q
1
G
1
H
0
I
2
L
1
K
0
M
0
F
2
P
0
S
0
T
2
W
1
Y
2
V
Amino Acid Distribution
A: 1 R: 0 N: 1 D: 2 C: 0 E: 2 Q: 0 G: 1 H: 1 I: 0 L: 2 K: 1 M: 0 F: 0 P: 2 S: 0 T: 0 W: 2 Y: 1 V: 2
Chemical Descriptors
18 reviewed residue count
C102H142N24O29 sequence-only estimate (linear, free termini)
2168.39 sequence-only estimate (linear, free termini)
4.06 sequence-only estimate (linear, free termini)
-3 sequence-only estimate (linear, free termini)
1.26 sequence-only estimate (linear, free termini)
-0.750 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.