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Peptide record

TPDB16026

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB16026
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LWRWLRKLLRRMR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C87H147N31O14S1
ANDCEQGHIFPSTYV
R
1883.38
13.00
6
0
7
+6
4.11
-0.854
120.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
11000
5.84
0
Residue Composition
number
0
A
5
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
4
L
1
K
1
M
0
F
0
P
0
S
0
T
2
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 5 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 4 K: 1 M: 1 F: 0 P: 0 S: 0 T: 0 W: 2 Y: 0 V: 0
Chemical Descriptors
13 reviewed residue count
C87H147N31O14S1 sequence-only estimate (linear, free termini)
1883.38 sequence-only estimate (linear, free termini)
13.00 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
4.11 sequence-only estimate (linear, free termini)
-0.854 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.