Back to search

Peptide record

TPDB16012

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB16012
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
VRKRPLVAL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C48H90N16O10
NDCEQGHIMFSTWY
RLV
1051.34
12.41
3
0
5
+3
1.74
0.367
162.22
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
0
Residue Composition
number
1
A
2
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
2
L
1
K
0
M
0
F
1
P
0
S
0
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 1 R: 2 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 2 K: 1 M: 0 F: 0 P: 1 S: 0 T: 0 W: 0 Y: 0 V: 2
Chemical Descriptors
9 reviewed residue count
C48H90N16O10 sequence-only estimate (linear, free termini)
1051.34 sequence-only estimate (linear, free termini)
12.41 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.74 sequence-only estimate (linear, free termini)
0.367 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.