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Peptide record

TPDB16009

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB16009
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LWDVIRKVASVIGGL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C76H128N20O19
NCEQHMFPTY
V
1625.97
10.09
2
1
9
+1
-0.35
1.107
168.67
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
5500
3.38
1
Residue Composition
number
1
A
1
R
0
N
1
D
0
C
0
E
0
Q
2
G
0
H
2
I
2
L
1
K
0
M
0
F
0
P
1
S
0
T
1
W
0
Y
3
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 2 L: 2 K: 1 M: 0 F: 0 P: 0 S: 1 T: 0 W: 1 Y: 0 V: 3
Chemical Descriptors
15 reviewed residue count
C76H128N20O19 sequence-only estimate (linear, free termini)
1625.97 sequence-only estimate (linear, free termini)
10.09 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.35 sequence-only estimate (linear, free termini)
1.107 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.