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Peptide record

TPDB15999

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB15999
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
QRMSRNFVRYVQGLKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C88H148N30O22S1
ADCEHIPTW
R
2010.39
12.14
5
0
6
+5
3.62
-1.088
60.62
Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour
1490
0.74
5
Residue Composition
number
0
A
3
R
1
N
0
D
0
C
0
E
2
Q
1
G
0
H
0
I
1
L
2
K
1
M
1
F
0
P
1
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 3 N: 1 D: 0 C: 0 E: 0 Q: 2 G: 1 H: 0 I: 0 L: 1 K: 2 M: 1 F: 1 P: 0 S: 1 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
16 reviewed residue count
C88H148N30O22S1 sequence-only estimate (linear, free termini)
2010.39 sequence-only estimate (linear, free termini)
12.14 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
3.62 sequence-only estimate (linear, free termini)
-1.088 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.