TPDB

3D PDB MODEL

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TPDB ID TPDB15976

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 36-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

AGAGFIKTLTKDCPEVVSQVCNMKTATCHCSIHVSK

FASTA

>TPDB15976|Antibacterial|length=36
AGAGFIKTLTKDCPEVVSQVCNMKTATCHCSIHVSK

Formula C161H268N46O50S5

Absent Amino Acids RWY

Common Amino Acids CKTV

Mass 3808.48

PI 8.31

Basic Residues 6

Acidic Residues 2

Hydrophobic Residues 12

Net Charge +2

Boman Index 7.82

Hydrophobicity 0.169

Aliphatic Index 73.06

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 250

Absorbance 280nm 6.56

Polar Residues 13

number

3

A

0

R

1

N

1

D

4

C

1

E

1

Q

2

G

2

H

2

I

1

L

4

K

1

M

1

F

1

P

3

S

4

T

0

W

0

Y

4

V

Amino Acid Distribution

A: 3 R: 0 N: 1 D: 1 C: 4 E: 1 Q: 1 G: 2 H: 2 I: 2 L: 1 K: 4 M: 1 F: 1 P: 1 S: 3 T: 4 W: 0 Y: 0 V: 4

Length

36

Formula

C161H268N46O50S5

Mass

3808.48

PI

8.31

Net Charge

+2

Boman Index

7.82

Hydrophobicity

0.169

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.