TPDB

3D PDB MODEL

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TPDB ID TPDB15973

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 41-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

ITSISLCTPGCKTGALMGCKTHETDSCNNGLCFESGKCTWV

FASTA

>TPDB15973|Antibacterial|length=41
ITSISLCTPGCKTGALMGCKTHETDSCNNGLCFESGKCTWV

Formula C178H287N49O60S7

Absent Amino Acids RQY

Common Amino Acids CT

Mass 4297.95

PI 6.75

Basic Residues 4

Acidic Residues 3

Hydrophobic Residues 10

Net Charge -0

Boman Index 4.85

Hydrophobicity 0.044

Aliphatic Index 57.07

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 136.69

Polar Residues 18

number

1

A

0

R

2

N

1

D

6

C

2

E

0

Q

5

G

1

H

2

I

3

L

3

K

1

M

1

F

1

P

4

S

6

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 1 R: 0 N: 2 D: 1 C: 6 E: 2 Q: 0 G: 5 H: 1 I: 2 L: 3 K: 3 M: 1 F: 1 P: 1 S: 4 T: 6 W: 1 Y: 0 V: 1

Length

41

Formula

C178H287N49O60S7

Mass

4297.95

PI

6.75

Net Charge

-0

Boman Index

4.85

Hydrophobicity

0.044

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.