TPDB

3D PDB MODEL

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TPDB ID TPDB15971

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

ITSISLCTPGCKTGALMGCTIVCGTDFDGR

FASTA

>TPDB15971|Antibacterial|length=30
ITSISLCTPGCKTGALMGCTIVCGTDFDGR

Formula C125H210N34O42S5

Absent Amino Acids NEQHWY

Common Amino Acids GT

Mass 3021.54

PI 5.94

Basic Residues 2

Acidic Residues 2

Hydrophobic Residues 9

Net Charge -0

Boman Index 1.25

Hydrophobicity 0.590

Aliphatic Index 78.00

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 250

Absorbance 280nm 8.27

Polar Residues 11

number

1

A

1

R

0

N

2

D

4

C

0

E

0

Q

5

G

0

H

3

I

2

L

1

K

1

M

1

F

1

P

2

S

5

T

0

W

0

Y

1

V

Amino Acid Distribution

A: 1 R: 1 N: 0 D: 2 C: 4 E: 0 Q: 0 G: 5 H: 0 I: 3 L: 2 K: 1 M: 1 F: 1 P: 1 S: 2 T: 5 W: 0 Y: 0 V: 1

Length

30

Formula

C125H210N34O42S5

Mass

3021.54

PI

5.94

Net Charge

-0

Boman Index

1.25

Hydrophobicity

0.590

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.