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Peptide record

TPDB15939

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB15939
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
NWFDITNKLWYIKKKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C104H157N25O23
ARCEQGHMPSV
K
2125.54
10.47
5
1
7
+4
1.88
-1.138
73.12
Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour
12490
5.88
4
Residue Composition
number
0
A
0
R
2
N
1
D
0
C
0
E
0
Q
0
G
0
H
2
I
1
L
5
K
0
M
1
F
0
P
0
S
1
T
2
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 2 D: 1 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 2 L: 1 K: 5 M: 0 F: 1 P: 0 S: 0 T: 1 W: 2 Y: 1 V: 0
Chemical Descriptors
16 reviewed residue count
C104H157N25O23 sequence-only estimate (linear, free termini)
2125.54 sequence-only estimate (linear, free termini)
10.47 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.88 sequence-only estimate (linear, free termini)
-1.138 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.