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Peptide record

TPDB15904

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB15904
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KWFYTMWH
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C61H75N13O11S1
ARNDCEQGILPSV
W
1198.41
9.74
2
0
5
+1
0.37
-0.775
0.00
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
12490
10.42
2
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
1
H
0
I
0
L
1
K
1
M
1
F
0
P
0
S
1
T
2
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 0 K: 1 M: 1 F: 1 P: 0 S: 0 T: 1 W: 2 Y: 1 V: 0
Chemical Descriptors
8 reviewed residue count
C61H75N13O11S1 sequence-only estimate (linear, free termini)
1198.41 sequence-only estimate (linear, free termini)
9.74 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.37 sequence-only estimate (linear, free termini)
-0.775 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.