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Peptide record

TPDB15900

Antibacterial standard
8 amino acids
Basic Information
3D PDB MODEL
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TPDB15900
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 8-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
LWFYAMWH
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C60H72N12O10S1
RNDCEQGIKPSTV
W
1153.37
7.77
1
0
7
+0
-1.49
0.500
61.25
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
12490
10.83
1
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
1
H
0
I
1
L
0
K
1
M
1
F
0
P
0
S
0
T
2
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 1 K: 0 M: 1 F: 1 P: 0 S: 0 T: 0 W: 2 Y: 1 V: 0
Chemical Descriptors
8 reviewed residue count
C60H72N12O10S1 sequence-only estimate (linear, free termini)
1153.37 sequence-only estimate (linear, free termini)
7.77 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
-1.49 sequence-only estimate (linear, free termini)
0.500 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.