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Peptide record

TPDB15680

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB15680
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
PRIPPGFPPRFPPRFEP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C98H142N26O20
ANDCQHLKMSTWYV
P
2004.37
12.10
3
1
4
+2
2.16
-1.018
22.94
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
0
0.00
0
Residue Composition
number
0
A
3
R
0
N
0
D
0
C
1
E
0
Q
1
G
0
H
1
I
0
L
0
K
0
M
3
F
8
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 0 E: 1 Q: 0 G: 1 H: 0 I: 1 L: 0 K: 0 M: 0 F: 3 P: 8 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C98H142N26O20 sequence-only estimate (linear, free termini)
2004.37 sequence-only estimate (linear, free termini)
12.10 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
2.16 sequence-only estimate (linear, free termini)
-1.018 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.