Back to search

Peptide record

TPDB15608

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB15608
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RGGLCYCRGRFCVCVG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C72H117N25O18S4
ANDEQHIKMPSTW
CG
1749.12
8.73
3
0
5
+3
1.25
0.537
60.62
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1740
0.99
5
Residue Composition
number
0
A
3
R
0
N
0
D
4
C
0
E
0
Q
4
G
0
H
0
I
1
L
0
K
0
M
1
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 4 H: 0 I: 0 L: 1 K: 0 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
16 reviewed residue count
C72H117N25O18S4 sequence-only estimate (linear, free termini)
1749.12 sequence-only estimate (linear, free termini)
8.73 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.25 sequence-only estimate (linear, free termini)
0.537 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.