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Peptide record

TPDB15605

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB15605
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
HWRLCYCRPKFCVCV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H129N25O17S4
ANDEQGIMST
C
1913.37
8.72
4
0
6
+3
1.12
0.340
64.67
Mammalian: 3.5 hour Yeast: 10 min E.coli: >10 hour
7240
3.78
5
Residue Composition
number
0
A
2
R
0
N
0
D
4
C
0
E
0
Q
0
G
1
H
0
I
1
L
1
K
0
M
1
F
1
P
0
S
0
T
1
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 2 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 0 H: 1 I: 0 L: 1 K: 1 M: 0 F: 1 P: 1 S: 0 T: 0 W: 1 Y: 1 V: 2
Chemical Descriptors
15 reviewed residue count
C86H129N25O17S4 sequence-only estimate (linear, free termini)
1913.37 sequence-only estimate (linear, free termini)
8.72 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.12 sequence-only estimate (linear, free termini)
0.340 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.