Back to search

Peptide record

TPDB15604

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB15604
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KWRLCYCRPKFCVCV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C86H134N24O17S4
ANDEQGHIMST
C
1904.40
9.21
4
0
6
+4
1.18
0.293
64.67
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
7240
3.80
5
Residue Composition
number
0
A
2
R
0
N
0
D
4
C
0
E
0
Q
0
G
0
H
0
I
1
L
2
K
0
M
1
F
1
P
0
S
0
T
1
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 2 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 1 K: 2 M: 0 F: 1 P: 1 S: 0 T: 0 W: 1 Y: 1 V: 2
Chemical Descriptors
15 reviewed residue count
C86H134N24O17S4 sequence-only estimate (linear, free termini)
1904.40 sequence-only estimate (linear, free termini)
9.21 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.18 sequence-only estimate (linear, free termini)
0.293 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.