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Peptide record

TPDB15601

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB15601
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
KGGKLCYCKKKFCVCVGK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C88H150N24O20S4
ARNDEQHIMPSTW
K
1992.55
9.87
6
0
5
+6
0.53
-0.050
53.89
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
1740
0.87
5
Residue Composition
number
0
A
0
R
0
N
0
D
4
C
0
E
0
Q
3
G
0
H
0
I
1
L
6
K
0
M
1
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 3 H: 0 I: 0 L: 1 K: 6 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
18 reviewed residue count
C88H150N24O20S4 sequence-only estimate (linear, free termini)
1992.55 sequence-only estimate (linear, free termini)
9.87 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
0.53 sequence-only estimate (linear, free termini)
-0.050 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.